
Sourdough Discard Blueberry Muffins
Tender, honey-sweetened muffins with a gentle sourdough tang, a nutty whole wheat crumb, and plenty of juicy blueberries. A hot oven start gives them tall, domed tops, and they're a great way to use up unfed discard.
- Prep
- 20 min
- Cook
- 20 min
- Wait
- 25 min
- Total
- 1 hr 5 min
- Makes
- 12 standard muffins
Steps
Before you start
- Use unfed sourdough discard at 100% hydration (equal weights flour and water), straight from the fridge or at room temperature. Stir it before measuring.
- Take the eggs, yogurt and milk out of the fridge 30 minutes ahead so the melted butter doesn't harden into clumps when mixed in.
- If using frozen blueberries, keep them frozen and do not thaw, or the batter will turn gray-purple.
- The batter rests 10 minutes before baking; preheat the oven during that rest.
Line the muffin tin
- Place a rack in the center of the oven.
- Line all 12 cups of a standard muffin tin with paper or silicone liners.
- Don't preheat yet; the batter rests first.
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Ready when: All 12 cups are lined and the tin is on the counter.
Tip: Paper liners can stick to low-fat muffins. If they do, lightly spray them with oil.
Coat the blueberries
- In a small bowl, gently toss the blueberries with 1 tablespoon (8 g) all-purpose flour until every berry has a light, dry coating.
- Set aside.
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Ready when: Berries look dusty with no wet patches of flour.
Tip: The flour helps keep the berries suspended in the batter instead of sinking to the bottom.
Whisk the dry ingredients
- In a large bowl, whisk together the whole wheat flour, 1 cup (125 g) all-purpose flour, baking powder, baking soda, salt, and cinnamon, if using, for about 30 seconds.
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Ready when: No streaks of baking soda or lumps remain, and the mixture is an even tan color.
Mix the wet ingredients
- In a medium bowl, whisk the eggs and honey for 30 seconds until combined.
- Add the sourdough discard, yogurt, milk, vanilla, and lemon zest, if using, and whisk until smooth.
- Pour in the cooled melted butter and whisk until the mixture is uniform.
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Ready when: The mixture is smooth and thick, with no visible streaks of honey, discard, or butter.
Tip: If the butter is hot, it can scramble the eggs. Let it cool until it feels just warm to the touch.
Fold into a batter
- Pour the wet mixture over the dry ingredients.
- Fold with a rubber spatula for about 15 strokes, until only a few dry streaks of flour remain.
- Add the floured blueberries and fold 4 to 5 more times to distribute them.
- The batter will be thick and scoopable.
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Ready when: Batter is thick and lumpy with just a few small flour streaks, and berries are evenly spread.
Tip: Stop mixing while the batter still looks a bit lumpy. Overmixing makes tough, tunneled muffins and bleeds blueberry color.
Rest the batterOven 400°F / 205°C
- Cover the bowl and let the batter rest on the counter for 10 minutes.
- This gives the whole wheat flour time to absorb liquid, which makes a more tender crumb and a taller dome.
- Meanwhile, preheat the oven to 400°F (200°C).
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Ready when: The batter looks slightly thicker and the oven has reached 400°F (200°C).
Tip: Use an oven thermometer if you can. The high-heat start only works if the oven is truly hot.
Fill the cups
- Use a large scoop or two spoons to divide the batter among the 12 liners, filling each to the top, about ¼ cup (60 ml) or 80 g batter each.
- Sprinkle the tops evenly with the coarse sugar, if using.
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Ready when: Each liner is full and mounded slightly above the rim.
Tip: If a few berries land on the surface, press them in lightly so they don't scorch.
Bake at high heatOven 400°F / 205°C
- Place the tin in the 400°F (200°C) oven and bake for 5 minutes without opening the door.
- This blast of heat makes the batter spring upward and form tall domes.
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Ready when: The tops have visibly puffed above the rim of the liners.
Tip: Don't open the oven door during this stage; the lost heat will flatten the rise.
Lower heat and finishOven 350°F / 175°C
- Without removing the tin, reduce the oven temperature to 350°F (175°C).
- Continue baking for 14 to 16 minutes, rotating the tin front to back after 8 minutes, until the muffins are deep golden and the centers spring back when lightly pressed.
- A toothpick inserted into the center (avoiding a berry) should come out clean or with a few dry crumbs.
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Ready when: Tops are deep golden and spring back when pressed; toothpick shows no wet batter.
Tip: A toothpick that hits a blueberry will look wet from the fruit, so test beside the berries.
Cool the muffins
- Let the muffins cool in the tin for 5 minutes, then lift them out onto a wire rack.
- Cool for at least 10 more minutes before eating so the crumb sets and the berries stop being molten.
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Ready when: Muffins are warm rather than hot, and the liners peel away cleanly.
Tip: Don't leave the muffins in the hot tin for longer than 5 minutes, or steam will make the bottoms soggy.
Good to know
Tips
- Measure flour by weight if possible. Packed cups of whole wheat flour can add up to 20% more and make dry muffins.
- Frozen blueberries work well; keep them frozen and fold them in at the last second to limit color bleeding.
- Discard that's been in the fridge for more than a week is more sour. For a milder tang, use discard that's 1 to 3 days old.
- Fill the liners fully for bakery-style domes; the 5-minute high-heat start is what lifts them.
Make ahead
"The batter can be covered and refrigerated for up to 24 hours (the sourdough tang deepens). Bake straight from the fridge, adding 2 to 3 minutes to the second bake stage. Fold in the berries just before baking for best color."
Storage & reheating
"Room temperature: store in an airtight container for up to 2 days, with a paper towel on the bottom to absorb moisture. Refrigerator: up to 5 days. Freezer: wrap individually and freeze for up to 3 months. Reheat room-temperature or fridge muffins in a 350°F (175°C) oven for 5 to 8 minutes, or microwave for 20 to 30 seconds. Reheat frozen muffins from frozen in a 350°F (175°C) oven for 15 to 18 minutes, or thaw overnight first."
Substitutions
- honey → pure maple syrup. Use the same weight (113 g / ⅓ cup). The flavor is a little more caramel-like and the muffins brown slightly less.
- plain whole-milk yogurt → sour cream or buttermilk. Sour cream swaps 1:1 by weight. Buttermilk (180 ml) makes a slightly looser batter, so rest it the full 10 minutes.
- unsalted butter → neutral oil such as avocado or light olive oil. Use 75 ml (5 tbsp) oil. The muffins will be a touch moister but less buttery.
- whole wheat flour → all-purpose flour. Use 125 g (1 cup) all-purpose flour for a lighter, paler muffin. Ready after about the same bake time.
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- Meal
- Breakfast
- Diet
- VegetarianHalal
- Method
- Oven
- Quick & Easy
- Easy



